Glycogene Discovery Service in Colorectal Adenocarcinoma
Colorectal Adenocarcinoma and Glycosylation
Colorectal carcinoma (CRC) is one of the most prevalent vicious tumors in the world. However, CRC patients often are found at advanced stages and cause the costliest health problems. Patients in advanced stages especially with metastatic lesions could have a poor prognosis, and the 5-year survival rate of CRC patients is only 13%. Therefore, it is important to find and distinguish new diagnostic indicators for the early detection and treatment of CRC. Tumor cell growth and proliferation are promoted by the changing of energy metabolism, which has been heralded as an emerging cancer hallmark. Therefore, glycolysis-related genes have been a potential target for cancer therapy, and many associated molecules participate in the regulation of glucose metabolism in CRC cells.
Fig.1 Important PTM types and related pathways in colorectal cancer. (Zhu, et al., 2022)
Glycogene Discovery Service in Colorectal Adenocarcinoma at CD BioGlyco
We analyze glycolysis-related genes by bioinformatics analysis to confirm a new biomarker for CRC patients, which is helpful for the early screening of patients clinically.
- Discovery methods
- Gene set enrichment analysis (GSEA)
- The cancer genome atlas (TCGA)
- Immunohistochemistry and real time-polymerase chain reaction (RT-PCR)
- Metabolomics analysis: Chromatography techniques, liquid/gas chromatography (LC/GC), mass spectrometry (MS), and nuclear magnetic resonance (NMR).
- Proteomics analysis: Chromatography and western blotting techniques, laser capture microdissection (LCM), protein microarrays, MS.
- Summary of glycogenes involved in colorectal adenocarcinoma
| Glycogenes | Function |
| Adenomatous polyposis coli (APC) | Inhibits cell growth. |
| Kirsten rat sarcoma virus (KRAS) | Induces cell invasion, and metastasis. |
| B-Raf | Induces cell proliferation. |
| Phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha (PIK3CA) | Induces cell proliferation. |
| Tumor protein p53 (TP53) | Inhibits cell cycle. |
| SMAD family member 4 (SMAD4) | Inhibits tumor metastasis, prognosis, and overall survival. |
| Enolase (ENO) | Anticancer effect. |
| Glypican 1 (GPC1) | Overexpressed in multiple tumors. |
| P4HA1 prolyl 4-hydroxylase subunit alpha 1 (P4HA1) | Promote tumor progression and metastasis. |
| Stanniocalcin 2 (STC2) | Regulates malignant tumor progression. |
| Sperm-associated antigen 4 (SPAG4) | Promotes survival of cancer cells under hypoxic. |
| ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 (ITIH2) | Potential role as an anti-invasive protein. |
| Collagen Type I Alpha 2 Chain (COL1A2) | Over-expressed in CRC tissues. |
| TIMP metallopeptidase inhibitor 1 (TIMP1) | Over-expressed in CRC tissues. |
| Aurora kinase A (AURKA) | Promote proliferation, survival, and growth of xenograft tumors. |
Fig.2 Glycogene discovery methods in colorectal adenocarcinoma. (CD BioGlyco)
Applications
- Clinical outcome indicators for CRC may use the glycolysis-related risk model.
- Integrated analysis of multi-omics data contributes to the discovery of useful diagnostic and prognostic biomarkers and therapeutic targets.
- These dysregulated genes could serve as potential targets that help scientists develop novel targeted drugs for the treatment of CRC.
Advantages
- There is a huge potential for searching for new early screening biomarkers and targets by integrated analysis of multi-omics data.
- Customize different types of services according to different projects and different clients to help clients complete their projects efficiently.
As a world-leading provider of Glycogenomics services, CD BioGlyco provides our clients with professional Cancer Glycogene Discovery Services and the expertise needed to solve a wide range of problems. We hope to be your right-hand man in your research. If you need the services, please feel free to contact us for more details.
Reference
- Zhu, G.; et al. Proteomics of post-translational modifications in colorectal cancer: Discovery of new biomarkers. Biochim Biophys Acta Rev Cancer. 2022, 1877(4): 188735.
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Resources
- Glyco™ Synthesis Platform
- Custom Glycoprotein Synthesis
- Custom Glycoside Synthesis
- Custom Glycosyl Donor Synthesis
- Custom Thioglycoside Synthesis
- Custom Phosphatidylinositol Synthesis
- Custom Cyclodextrin Synthesis
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- Glycomics Platform
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- N-Glycoproteomics of PDX Models
- Nanotechnologies for the Detection of Glycopeptides
- Glycoprotein Enrichment
- Glycoprotein Quantification
- Glyco-biomarker Detection Service
- Glyco-biomarker AFP Detection Service
- Glyco-biomarker CA19-9 Detection Service
- Glyco-biomarker CA125 Detection Service
- Glyco-biomarker CA15–3 Detection Service
- Glyco-biomarker CEA Detection Service
- Glyco-biomarker PSA Detection Service
- Glyco-biomarker Immunoglobulin G (IgG) Detection Service
- Glyco-biomarker Haptoglobin (Hp) Detection Service
- Glyco-biomarker α1-Antitrypsin (A1AT) Detection Service
- Glyco-biomarker α1-Acid Glycoprotein (AGP) Detection Service
- Glyco-biomarker Ceruloplasmin (CP) Detection Service
- Glyco-biomarker Fetuin A Detection Service
- Site Occupation
- Glycoprotein Structure Analysis
- Glycosylation Site-specific Antibody-Drug Conjugate (ADC) Development Platform
- Carbohydrate-based Glycomedicine Development Platform
- By Sources of Carbohydrate
- By Types of Carbohydrate
- Monosaccharides-based Glycomedicine Development
- Disaccharides-based Glycomedicine Development
- Trisaccharides-based Glycomedicine Development
- Oligosaccharides-based Glycomedicine Development
- Polysaccharides-based Glycomedicine Development
- Glycosides-based Glycomedicine Development
- Glycopeptide-based Glycomedicine Development
- Glycomimetic-based Glycomedicine Development
- By Applications of-based Glycomedicines
- Carbohydrate-based Anticoagulant Glycomedicine Development
- Carbohydrate-based Cardiovascular Glycomedicine Development
- Carbohydrate-based Antitumor Glycomedicine Development
- Carbohydrate-based Antidiabetic Glycomedicine Development
- Carbohydrate-based Antibacterial Glycomedicine Development
- Carbohydrate-based Antiviral Glycomedicines Development
- Carbohydrate-based Antiparasiti Glycomedicine Development
- By Discovery Strategies
- Glycoengineering-based Glycomedicine Development
- Production of Food Ingredients
- Multi-omics Platform for Cancer Glucose Metabolism (MOPCGM)
- Cancer Cell Glycolytic Analysis
- Cancer Cell TCA Cycle Analysis
- Cancer Cell PPP Analysis
- Gene-level Regulation Analysis of Cancer Glucose Metabolism
- Interplay Between Glucose Metabolism Reprogramming and Tumorigenesis & Progression
- Interplay Between Glucose Metabolism Reprogramming and Proliferative Signaling
- Interplay Between Glucose Metabolism Reprogramming and Growth Suppressor
- Interplay Between Glucose Metabolism Reprogramming and Cancer Cell Death
- Interplay Between Glucose Metabolism Reprogramming and Replicative Immortality
- Interplay Between Glucose Metabolism Reprogramming and Angiogenesis
- Interplay Between Glucose Metabolism Reprogramming and Invasion & Metastasis
- Interplay Between Glucose Metabolism Reprogramming and Immune Escape
- Interplay Between Glucose Metabolism Reprogramming and Genomic Instability
- Interplay Between Glucose Metabolism Reprogramming and Tumor-associated Inflammation
- Glucose Metabolism-Microenvironment Crosstalk Analysis in Cancer
- Cancer Glucose Metabolism In Vivo Analysis
- Applications of Studing Cancer Glucose Metabolism
- Discovery of Cancer Glucose Metabolism Small Molecule Inhibitor
- Discovery of Cancer Glucose Metabolism Therapeutic Monoclonal Antibodies
- Development of Gene Therapy Targeting Cancer Glucose Metabolism
- Discovery of Cancer Glucose Metabolism CAR-T Therapy Targeting
- Discovery of Cancer Glucose Metabolism Combination Therapy Strategy
- Discovery of Cancer Glucose Metabolism Precision Therapeutic Strategies
- Glycoengineering Platform
- Therapeutic Nucleic Acid Development Platform
- Therapeutic Oligonucleotide Synthesis Service
- siRNA Synthesis
- miRNA Synthesis
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- Aptamer Synthesis
- PMO Synthesis
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- Circular RNA Synthesis
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- Solution Phase-based GalNac-RNA Delivery
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- mRNA Poly(A) Tail Length Analysis
- GalNAc-siRNA Delivery
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- mRNA Structural Characterization
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- Carrier Protein Design Service
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- Glycogenomics Platform
- Glycogene Editing Service
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- Cancer Glycogene Discovery Service
- Glycogene Discovery Service in Cervical Cancer
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- Glycan Display Platform
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- Examining the Effects of Altering Blood Group Antigens on Erythrocyte Cell Surfaces
- Preventing Cellular Rejection During Transplantation
- Modulating Chemical Composition and Physical Parameters of Glycocalyx
- Tailoring Cell Membranes with Biologically Active Glycans
- Targeting Glycosaminoglycan-mediated Growth Factor Signaling to Influence Stem Cell Specification
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- PEG Glyconanoparticle
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- Liposome Glyconanoparticle
- Glycol Nanohydrogel Development
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- Glycol Nanocrystal/Nanosheet/Nanosphere/Nanofiber
- Glyconanoparticle Preclinical Study
- Glyconanoparticle Formulation
- Glyconanotechnology-based Biosensor Development
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- Glyconanoparticle Development Service
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